CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

Optimal and suboptimal structures of most frequent Psi variants above the error level 0.5%

[ ΔΔG in kcal/mol is given in brackets ]

PsiRS + A     (ΨRS)

C + PsiRS + AG     (ΨCGAxA)

CU + PsiRS + AG     (ΨCU-AG)

U + PsiRS + AG     (ΨU-A)

UU + PsiRS + AG

Psi1A     (Ψ1A)

UUU + Psi1A + AG     (Ψ1A3U)

UUUU + Psi1A + AG     (Ψ1A4U)

UUUUU + Psi1A + AG     (Ψ1A5U)

Psi12A + A     (Ψ12A)

U + Psi12A + AG     (Ψ12AU-A)

UUUU + Psi1A,12A + AG     (Ψ1A,12A4U)

UUUU + Psi1A,21G + AG     (Ψ1A,21G4U)