CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

Optimal and suboptimal structures of most frequent SD variants above the error level 0.5%

[ ΔΔG in kcal/mol is given in brackets ]

SDRS

C + SDRS + G     (SDC-G)

SD5G

GGC + SD5G

GGC + SD7C

C + SD1A,19U + G     (SD1A,19UC-G)

SD6A,7C

SD1A,6A,7C,19U

C + SD1A,6A,7C,19U + G     (SD1A,6A,7C,19UC-G)