CESSHIV-1 database

General information on HIV-1 isolate

# 919

Accession number	AB286863
Name	p03GH197AG66
Subtype	CRF02_AG
Country	Ghana
Sampling year	2003
Patient	197

AB286863 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggactcggc ttgctgaagt gcacacagca agaggcgaga g-cggcgactg gtgagtacgc caaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AB286853(#943) AB286854(#944)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy