CESSHIV-1 database

General information on HIV-1 isolate

# 3489

Accession number	AB371848
Name	JRC38
Subtype	B
Country	Japan
Submitted to NCBI	2007

AB371848 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY586542(#670) AY856988(#1604) EF178349(#1677) EF363122(#964) EF363123(#965) EF370378(#1799) GU362886(#3845) GU595154(#3323)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy