CESSHIV-1 database

General information on HIV-1 isolate

# 2751

Accession number	AB485660
Name	BCF-Dioum
Subtype	CRF06_cpx
Country	DRC
Submitted to NCBI	2009
Patient	BCFdioum

AB485660 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacgcagcaa gaggcgagag -cggcgactgg tgagtacgcc aaa--ttttgac tagcagaggc tagaaggaga ga

Isolates with identical sequences of region:

AB485661(#2752)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy