CESSHIV-1 database

General information on HIV-1 isolate

# 2754

Accession number	AB485663
Name	HH8793
Subtype	G
Country	Kenya
Sampling year	1993
Patient	HH8793

AB485663 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacgcagcaa gaggcgagag -cggcgactgg tgagtacgcc aaactttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AB485662(#2753) AF061640(#26) AF061641(#27)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy