CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3506
Accession number AB547463
Name JKT189-C
SubtypeCRF33_01B
CountryIndonesia
Sampling year 2007
PatientJKT189

AB547463 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag gcggcgactg gtgagtacgc caa---ttttgac tagcggaggc tagaaggaga ga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012