CESSHIV-1 database

General information on HIV-1 isolate

# 143

Accession number	AF110977
Name	C-96BW16D14
Subtype	C
Country	Botswana
Sampling year	1996
Patient	96BW16

AF110977 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgaggg gaggcggctg gtgagtacgc caatttttat ttgactacca gaggctataa ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy