CESSHIV-1 database

General information on HIV-1 isolate

# 87

Accession number	AF286365
Name	WR27
Subtype	B
Country	USA
Sampling year	1988
Patient	WR27

AF286365 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcgcggcaa gaggcgaggg gcggcgactg gtgagtacgc cataa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy