CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1417
Accession number AF378083
Name ESP1_8
SubtypeGroup O
CountrySpain (Equatorial Guinea)
Submitted to NCBI 2001
PatientESP1

AF378083 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tagcggagtg cacccgctaa gaggcgag----ag gaact-cacag agggtgagta attttg-ctgg cggtggccag acctagggga agggcgaagt ctctagggga ggaa

Isolates with identical sequences of region:

AY623602(#392) L20587(#14)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy