CESSHIV-1 database

General information on HIV-1 isolate

# 241

Accession number	AY162225
Name	TV012 clone 2/1_4
Subtype	C
Country	South Africa
Sampling year	1998
Patient	TV012

AY162225 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag a-ggcggctgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AF443077(#175) AY118166(#281) DQ351227(#626)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy