CESSHIV-1 database

General information on HIV-1 isolate

# 375

Accession number	AY322185
Name	ML013-2-1997
Subtype	A1
Country	Kenya
Sampling year	1997
Patient	013

AY322185 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaagcgagag -cggcgactgg tgagtacgcc aaaaattttt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy