CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 313
Accession number AY352655
Name SE9010
SubtypeA1GHKU
CountrySweden (DRC)
Sampling year 1995
Patient9010

AY352655 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgaggg gcagcgaacg gtgagtacgc catat-ttttg actagcggag gctagaagga gaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012