CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3521
Accession number AY508130
Name 7_B2
SubtypeB
CountryUSA
Submitted to NCBI 2003

AY508130 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgagag gcggcgactg gtgagtacgc cgaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AY508148(#3539)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy