CESSHIV-1 database

General information on HIV-1 isolate

# 384

Accession number	AY560110
Name	98USHVTN941c1
Subtype	B
Country	USA
Sampling year	1998
Patient	941

AY560110 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

EU170143(#2785) EU170151(#2793) EU170154(#2796)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy