CESSHIV-1 database

General information on HIV-1 isolate

# 390

Accession number	AY703911
Name	04ZASK144B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-144

AY703911 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aaaattttat ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

EU884500(#1195)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy