CESSHIV-1 database

General information on HIV-1 isolate

# 414

Accession number	AY772701
Name	03ZASK091B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-091

AY772701 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgaga g-cggcggctg gtgagtacgc caaatttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy