CESSHIV-1 database

General information on HIV-1 isolate

# 613

Accession number	AY835776
Name	5127-93 clone pbf30
Subtype	B
Country	USA
Sampling year	1993
Patient	5127

AY835776 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaatttttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

EF370249(#1727) EF370372(#1798) EU047685(#1881)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy