CESSHIV-1 database

General information on HIV-1 isolate

# 441

Accession number	AY901978
Name	04ZASK155B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-155

AY901978 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagag g-ggcggctgg tgagtacgcc aattttattt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy