CESSHIV-1 database

General information on HIV-1 isolate

# 1666

Accession number	AY957481
Name	INF5 clone 6
Subtype
Country	Tanzania
Submitted to NCBI	2005
Patient	INF5

AY957481 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcagcgaacg gtgagtacgc aaaaactttt gactagcgga ggctagaagg agag

Isolates with identical sequences of region:

AY957477(#1662) AY957478(#1663) AY957480(#1665)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy