CESSHIV-1 database

General information on HIV-1 isolate

# 487

Accession number	DQ056417
Name	04ZASK217B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-217

DQ056417 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcggctgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AM076851(#1552) AM076852(#1553) AM076868(#1570) DQ351234(#633) DQ369985(#651) DQ396381(#703) EU786673(#1186)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy