CESSHIV-1 database

General information on HIV-1 isolate

# 492

Accession number	DQ093588
Name	04ZAPS214B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	214B1

DQ093588 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgaga g-cggcgactg gtgagtacgc caattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy