CESSHIV-1 database

General information on HIV-1 isolate

# 559

Accession number	DQ164122
Name	04ZAPS188B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	188B1

DQ164122 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aattttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AF286225(#98) AF443104(#202) AY772692(#405) AY772693(#406) AY901968(#431) DQ011165(#455) DQ093602(#506) DQ164114(#551) DQ275661(#1239) DQ396374(#696) DQ396375(#697) DQ396399(#721)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy