CESSHIV-1 database

General information on HIV-1 isolate

# 631

Accession number	DQ351232
Name	04ZAPS157MB1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	157MB

DQ351232 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgaga gg-ggcgactg gtgagtacgc catttttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy