CESSHIV-1 database

General information on HIV-1 isolate

# 1438

Accession number	DQ853470
Name	14202_1
Subtype	B
Country	USA
Sampling year	1998
Patient	PIC1362

DQ853470 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc cataa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

DQ853436(#828) DQ853438(#830) DQ853449(#831) DQ853450(#832) DQ853451(#833) DQ853452(#834) DQ853453(#835) DQ853454(#836) DQ853459(#841) DQ853460(#842) DQ853461(#843) DQ853463(#845) DQ853465(#847) DQ853466(#1434) DQ853467(#1435) DQ853468(#1436) DQ853471(#1439) DQ853472(#1440) DQ853473(#1441) DQ853475(#1443)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy