CESSHIV-1 database

General information on HIV-1 isolate

# 970

Accession number	DQ854714
Name	M61
Subtype	B
Country	Spain
Sampling year	1989
Patient	89ES061

DQ854714 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gacggcgact ggtgagtacg ccaaaa-tttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AF256204(#1070) AF256205(#81) AF256206(#82) AF256207(#83) AF256209(#1072) AF256210(#1073) AF256211(#84) AJ006287(#39) DQ854715(#971) DQ854716(#972) GQ386774(#3255) GQ386775(#3257) GQ386776(#3206) GQ386777(#3258) GQ386778(#3263) GQ386779(#3264) GQ386780(#3265) GQ386781(#3269) GQ386782(#3270) GQ386783(#3271) GQ386788(#3276) GQ386789(#3277) GQ386790(#3278) GQ386791(#3279)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy