CESSHIV-1 database

General information on HIV-1 isolate

# 850

Accession number	EF036528
Name	Fj052
Subtype	CRF01_AE
Country	China
Sampling year	2005
Patient	Fj052

EF036528 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcggctgg tgagtacgcc aaa--ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

AB052600(#1056) AB220946(#729) AF530576(#279)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy