CESSHIV-1 database

General information on HIV-1 isolate

# 1686

Accession number	EF178376
Name	MS2004_37_078
Subtype	B
Country	Australia
Sampling year	2004
Patient	- (4164371)

EF178376 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgs caat--ttttga ctagcggagg ctagaaggag aga

Isolates with identical sequences of region:

AY857044(#1632)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy