CESSHIV-1 database

General information on HIV-1 isolate

# 1456

Accession number	EF370183
Name	93KJS7_2433
Subtype	B
Country	South Korea
Sampling year	1993
Patient	KJS

EF370183 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaaattt ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

EF370260(#1732) EU047670(#1868) M93258(#7) M93259(#6)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy