CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2674
Accession number FJ358521
Name CH80
SubtypeCRF44_BF
CountryChile
Sampling year 2000

FJ358521 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagag g-ggcgactgg tgagtacgcc aatt-ttttga ctagcagagg ctagaaggag aga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012