CESSHIV-1 database

General information on HIV-1 isolate

# 2616

Accession number	FJ496160
Name	WEAU_flE3
Subtype	B
Country	USA
Sampling year	1990
Patient	WEAU0575

FJ496160 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc cgaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

FJ496158(#2614) FJ496159(#2615) FJ496161(#2617) FJ496162(#2618) FJ496163(#2619) FJ496164(#2620) FJ496165(#2621) FJ496166(#2622) U21135(#29)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy