CESSHIV-1 database

General information on HIV-1 isolate

# 2628

Accession number	FJ496172
Name	WITO_flC3
Subtype	B
Country	USA
Sampling year	2000
Patient	WITO4160

FJ496172 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcagcgactg gtgagtacgc tgaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

FJ496167(#2623) FJ496168(#2624) FJ496169(#2625) FJ496170(#2626) FJ496171(#2627) FJ496173(#2629) FJ496174(#2630) FJ496175(#2631) FJ496176(#2632) FJ496177(#2633) FJ496178(#2634) FJ496179(#2635) FJ496180(#2636) FJ496181(#2637) FJ496182(#2638) FJ496183(#2639) FJ496184(#2640)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy