CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1858
Accession number FJ711703
Name 00GBAC4001
SubtypeH
CountryUnited Kingdom (DRC)
Sampling year 2000
PatientAC4001

FJ711703 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctga-gtgc acacggcaag aggcgagggg cggcgcgact ggtgagtacg ccgaaaaatt tttgtttttg actagcggag gctagaagga gaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012