CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2663
Accession number GQ351296
Name RBF208
SubtypeDO
CountryFrance
Sampling year 2008
PatientRBF208

GQ351296 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tagcggagtg cacccgctaa gaggcgagag gactc-acaga aggg---gtgagt aawtttg-ctg gcggtggcca gacctagggg aagggcgaag tccctagggg aggaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012