CESSHIV-1 database

General information on HIV-1 isolate

# 3312

Accession number	GU647196
Name	plwj11_6
Subtype	B'
Country	China
Sampling year	1999
Patient	LWJ

GU647196 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgagag gcg-cgactgg tgagtacgcc att--ttttgac tagcggaggc tagaaggaga ga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy