CESSHIV-1 database

General information on HIV-1 isolate

# 2716

Accession number	AB480301
Name	DR6190
Subtype	CRF46_BF
Country	Japan
Sampling year	2004
Patient	DR6190

AB480301 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccatttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

AB480300(#2715) AB485656(#2747) AB485657(#2748) AF086817(#37) AF196714(#1285) AF196765(#1328) AF385935(#159) AF408630(#155) AM851091(#1081) DQ295195(#572) EF370174(#1708) EF370180(#1454) EF370387(#1803) EU047612(#1815) EU047621(#1823) EU047623(#1825) EU047684(#1880) EU735538(#1052) FJ771010(#1855) GU595154(#3323) GU733713(#3313) GU733714(#3319) GU733715(#3320) GU733716(#3321) GU733717(#3322) U21135(#29) U51289(#2509) U81475(#2580)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy