CESSHIV-1 database

General information on HIV-1 isolate

# 1309

Accession number	AF196743
Name	93TN68
Subtype	A
Country	Tanzania
Sampling year	1993

AF196743 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccactcta gactgtgta-a aaatctctag ca

Isolates with identical sequences of region:

AF096633(#1914) AF096636(#1917) AY118156(#1989) AY118161(#1992) AY932653(#2123)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy