CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1116
Accession number EU697907
Name J11243
SubtypeCRF43_02G
CountrySaudi Arabia
Sampling year 2003
PatientJ11243

EU697907 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa agcctcaata aagcttgcct tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact ctggtaacta gagatccctc agaccactcc agactgtgtg -aaaatctctg gca

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012