CESSHIV-1 database

General information on HIV-1 isolate

# 2359

Accession number	FJ614942
Name	00MHI10_5011
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	2000
Patient	MHI

FJ614942 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccattcta gcttgggta-a aaatctctag ca

Isolates with identical sequences of region:

FJ614932(#2349) FJ614933(#2350) FJ614934(#2351) FJ614943(#2360) FJ614944(#2361) FJ614946(#2363) FJ614949(#2366)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy