General information on HIV-1 isolate
# 889
| Accession number |
AB253711 |
| Name | pJPDR2192AE42 |
| Subtype | CRF01_AE |
| Country | Japan |
| Submitted to NCBI |
2006 |
| Patient | NH19-203 |
AB253711 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .
The region encompassing PBS domainThe primary sequence:
tgtgttagga ctctggtaac tagagatccc tcagaccact ctagactgag ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gtgaaagtta atagggactc gaaagcggaa ggtt---ccagag aagttctctc gacgcaggac
Isolates with identical sequences of region:
AB253703(#881)
AB253705(#883)
AB253706(#884)
AB253707(#885)
AB253708(#886)
AB253709(#887)
AB253712(#890)
AB253713(#891)
AB253716(#894)
The optimal secondary structure:
The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy
