CESSHIV-1 database

General information on HIV-1 isolate

# 935

Accession number	AB287369
Name	p99JPDR1348B05
Subtype	B
Country	Japan
Sampling year	1999
Patient	NH0801

AB287369 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

AB287370(#936) U73099(#2524)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy