CESSHIV-1 database

General information on HIV-1 isolate

# 1936

Accession number	AF096655
Name	TZB0022
Subtype	A
Country	Tanzania
Sampling year	1996
Patient	22

AF096655 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagactgtg ta-aaaatctc tagcagtggc gcccgaacag ggactcgaaa gcgaaagtt---c cagagaagtt ctctcgacgc aggac

Isolates with identical sequences of region:

AF096633(#1914) AF096636(#1917) AF239631(#1953) AF239658(#1980) AY932653(#2123) AY932654(#2124) AY932659(#2129)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy