CESSHIV-1 database

General information on HIV-1 isolate

# 1548

Accession number	AM076848
Name	PG5_33
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG5

AM076848 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacctct ttggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggactcgaaa gcgaaagtag aaccagagga gatctctcga cgcaggac

Isolates with identical sequences of region:

AM076849(#1549) AM076850(#1551)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy