CESSHIV-1 database

General information on HIV-1 isolate

# 1992

Accession number	AY118161
Name	93CB76
Subtype	CRF02_AG
Country	Caribbean
Sampling year	1993
Patient	93CB76

AY118161 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagactgtg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaag ttaataggga ctcgaaagcg aaagtt---ccag agaagatctc tcgacgcaag gac

Isolates with identical sequences of region:

AY118156(#1989)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing PBS domain

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy