CESSHIV-1 database

General information on HIV-1 isolate

# 1664

Accession number	AY957479
Name	INF5 clone 3
Subtype
Country	Tanzania
Submitted to NCBI	2005
Patient	INF5

AY957479 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacctct ctagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagca aaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

AY957477(#1662) AY957480(#1665) AY957481(#1666)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy