CESSHIV-1 database

General information on HIV-1 isolate

# 480

Accession number	DQ056410
Name	03ZASK107B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-107

DQ056410 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccaac tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacgcgaa agcgaaagta agaccagaga agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy