CESSHIV-1 database

General information on HIV-1 isolate

# 546

Accession number	DQ164109
Name	04ZAPS193B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	193B1

DQ164109 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tttggtagtg ggaaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagaga agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy