CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 549
Accession number DQ164112
Name 04ZAPS211B1
SubtypeC
CountrySouth Africa
Sampling year 2004
Patient211B1

DQ164112 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tttggtagag tggaaaatct ctagcagtgg cgcccgaaca gggacgcgaa agcgaaagta agaccagagc agacctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy