CESSHIV-1 database

General information on HIV-1 isolate

# 557

Accession number	DQ164120
Name	04ZAPS284B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	284B1

DQ164120 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacc-ttt tggt-agtgtg gaaaatctct agcagtggcg cccgaacagg gacttgaaag cgaaagtaag accagagaaa atctctcgac gcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy