CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 560
Accession number DQ164123
Name 03ZASK008B2
SubtypeC
CountrySouth Africa
Sampling year 2003
Patient008B2

DQ164123 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccaat tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy